Scaffold Hopping in Medicinal Chemistry

ISBN 13: 9783527333646

Scaffold Hopping in Medicinal Chemistry

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9783527333646: Scaffold Hopping in Medicinal Chemistry
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This first systematic treatment of the concept and practice of scaffold hopping shows the tricks of the trade and provides invaluable guidance for the reader's own projects.

The first section serves as an introduction to the topic by describing the concept of scaffolds, their discovery, diversity and representation, and their importance for finding new chemical entities. The following part describes the most common tools and methods for scaffold hopping, whether topological, shape-based or structure-based. Methods such as CATS, Feature Trees, Feature Point Pharmacophores (FEPOPS), and SkelGen are discussed among many others. The final part contains three fully documented real-world examples of successful drug development projects by scaffold hopping that illustrate the benefits of the approach for medicinal chemistry.

While most of the case studies are taken from medicinal chemistry, chemical and structural biologists will also benefit greatly from the insights presented here.

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About the Author:

Nathan Brown is the Head of the In Silico Medicinal Chemistry group in the Cancer Therapeutics Unit at The Institute of Cancer Research in London (UK). At the ICR, Dr. Brown and his group support the entire drug discovery portfolio together with developing new computational methodologies to enhance the drug design work.

Nathan Brown conducted his doctoral research in Sheffield with Professor Peter Willett focusing on evolutionary algorithms and graph theory. After a two-year Marie Curie Fellowship in Amsterdam in collaboration with Professor Johann Gasteiger in Erlangen, he joined the Novartis Institutes for BioMedical Research in Basel for a three-year Presidential Fellowship in Basel working with Professors Peter Willett and Karl-Heinz Altmann.

His work has led to the pioneering work on multiobjective de novo design in addition to a variety of discoveries and method development in scaffold hopping, bioisosteric identifi cation and replacement, molecular descriptors and statistical modeling. Nathan continues to pursue his research in all aspects of in silico medicinal chemistry.

Review:

“This book outlines the key concepts, methods and examples of scaffold hopping in pharmaceutical and related industries.  Examples from academia and from industry are fully described, and this book serves as the primary reference to the current state of research in the field.”   (ChemMedChem, 1 January 2015)

 

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Editor: Nathan Brown (The Institute of Cancer Research, Sutton, UK); Series Editor: Raimund Mannhold (University of Düsseldorf, Ge); Series Editor: Hugo Kubinyi (University of Heidelberg, Germany); Series Editor: Gerd Folkers (Swiss Institute of
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Book Description Condition: New. Publisher/Verlag: Wiley-VCH | Your drug candidate isn t safe or patentable? The solution may be just a short hop away! Professional drug developers use real-world examples to demonstrate how every medicinal chemist can be more creative and more successful through scaffold-based design of molecules. | This first systematic treatment of the concept and practice of scaffold hopping shows the tricks of the trade and provides invaluable guidance for the reader's own projects.The first section serves as an introduction to the topic by describing the concept of scaffolds, their discovery, diversity and representation, and their importance for finding new chemical entities. The following part describes the most common tools and methods for scaffold hopping, whether topological, shape-based or structure-based. Methods such as CATS, Feature Trees, Feature Point Pharmacophores (FEPOPS), and SkelGen are discussed among many others. The final part contains three fully documented real-world examples of successful drug development projects by scaffold hopping that illustrate the benefits of the approach for medicinal chemistry.While most of the case studies are taken from medicinal chemistry, chemical and structural biologists will also benefit greatly from the insights presented here. | PART I: SCAFFOLDS: IDENTIFICATION, REPRESENTATION DIVERSITY AND NAVIGATIONIdentifying and Representing ScaffoldsMarkush Structures and Chemical PatentsScaffold Diversity in Medicinal Chemistry SpaceScaffold Mining of Publicly Available Compound DataExploring Virtual Scaffold SpacesPART II: SCAFFOLD HOPPING METHODSSimilarity-Based Scaffold Hopping Using 2D FingerprintsCATS for Scaffold-Hopping in Medicinal ChemistryReduced GraphsFeature TreesFeature Point Pharmacophores (FEPOPS)Three-Dimensional Scaffold Replacement MethodsSpherical Harmonic Molecular Surfaces (ParaSurf and ParaFit)The XED Forcefield and SparkMolecular Interaction FingerprintsSkelGenPART III: CASE STUDIESCase Study 1: Scaffold Hopping for T-Type Calcium Channel and Glycine Transporter Type 1 InhibitorsCase Study 2: Bioisosteric Replacements for the Neurokinin 1 Receptor (NK1R)Case Study 3: Fragment Hopping to Design Highly Potent and Selective Neuronal Nitric Oxide Synthase Inhibitors | Format: Hardback | Language/Sprache: english | 856 gr | 244x166x22 mm | 328 pp. Seller Inventory # K9783527333646

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Book Description Wiley VCH Verlag Gmbh Dez 2013, 2013. Buch. Condition: Neu. Neuware - This first systematic treatment of the concept and practice of scaffold hopping shows the tricks of the trade and provides invaluable guidance for the reader's own projects. The first section serves as an introduction to the topic by describing the concept of scaffolds, their discovery, diversity and representation, and their importance for finding new chemical entities. The following part describes the most common tools and methods for scaffold hopping, whether topological, shape-based or structure-based. Methods such as CATS, Feature Trees, Feature Point Pharmacophores (FEPOPS), and SkelGen are discussed among many others. The final part contains three fully documented real-world examples of successful drug development projects by scaffold hopping that illustrate the benefits of the approach for medicinal chemistry. While most of the case studies are taken from medicinal chemistry, chemical and structural biologists will also benefit greatly from the insights presented here. 304 pp. Englisch. Seller Inventory # 9783527333646

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Book Description Wiley VCH Verlag Gmbh Dez 2013, 2013. Buch. Condition: Neu. Neuware - This first systematic treatment of the concept and practice of scaffold hopping shows the tricks of the trade and provides invaluable guidance for the reader's own projects. The first section serves as an introduction to the topic by describing the concept of scaffolds, their discovery, diversity and representation, and their importance for finding new chemical entities. The following part describes the most common tools and methods for scaffold hopping, whether topological, shape-based or structure-based. Methods such as CATS, Feature Trees, Feature Point Pharmacophores (FEPOPS), and SkelGen are discussed among many others. The final part contains three fully documented real-world examples of successful drug development projects by scaffold hopping that illustrate the benefits of the approach for medicinal chemistry. While most of the case studies are taken from medicinal chemistry, chemical and structural biologists will also benefit greatly from the insights presented here. 304 pp. Englisch. Seller Inventory # 9783527333646

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Book Description Wiley VCH Verlag Gmbh Dez 2013, 2013. Buch. Condition: Neu. Neuware - This first systematic treatment of the concept and practice of scaffold hopping shows the tricks of the trade and provides invaluable guidance for the reader's own projects. The first section serves as an introduction to the topic by describing the concept of scaffolds, their discovery, diversity and representation, and their importance for finding new chemical entities. The following part describes the most common tools and methods for scaffold hopping, whether topological, shape-based or structure-based. Methods such as CATS, Feature Trees, Feature Point Pharmacophores (FEPOPS), and SkelGen are discussed among many others. The final part contains three fully documented real-world examples of successful drug development projects by scaffold hopping that illustrate the benefits of the approach for medicinal chemistry. While most of the case studies are taken from medicinal chemistry, chemical and structural biologists will also benefit greatly from the insights presented here. 304 pp. Englisch. Seller Inventory # 9783527333646

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