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The Special Issue "Functionalized Nanostructures for Novel Energy Storage Systems" brings together eleven carefully selected manuscripts that explore the role of nanostructures in advancing energy storage technologies. This collection highlights innovative approaches to improving lithium-ion batteries and related systems, focusing on enhanced performance, environmental sustainability, and scalability for commercial applications. Topics include hierarchically structured cathodes, laser-structured electrodes, novel anode materials, aqueous manufacturing processes, and catalytic applications of nanomaterials. By addressing challenges such as ion transport, mechanical stability, and environmental impact, these studies provide valuable insights into the design and optimization of next-generation energy storage systems. This Special Issue is a must-read for researchers, engineers, and industry professionals seeking cutting-edge solutions to meet the growing demand for efficient and sustainable energy storage technologies.